Eyes
It's common to say “I see” when we understand something. And indeed, “seeing” in the Bible represents grasping and understanding spiritual things. So it makes sense that the eyes, which allow us to see, represent the intellect, which allows us to understand spiritual things. This can also be used in the negative, of course; the Bible speaks of people having eyes and refusing to see, and the Lord when He was in the world advised plucking out an offending eye. These represent a refusal to acknowledge truth, or being misled by falsity.
Arcana Coelestia # 2623
2623. 'A son' means the Divine Rational. This is clear from the meaning of 'a son'. In the internal sense of the Word 'a son' means truth, 489, 491, 533; and because truth is the principal element in the rational, 2072, 2189, 'a son' also means the rational. But here the Divine Rational is meant in which the principal element is good. 'Isaac' too, to whom 'a son' refers, represents this good, as will be shown further on.